Parametrizing analog multi-compartment neurons with genetic algorithms

List of Authors

  1. Raphael Stock ,  
  2. Jakob Kaiser ,  
  3. Eric Müller
    ,  
  4. Johannes Schemmel
    ,  
  5. Sebastian Schmitt
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Abstract

Background

Finding appropriate model parameters for multi-compartmental neuron models can be challenging. Parameters such as the leak and axial conductance are not always directly derivable from neuron observations but are crucial for replicating desired observations. The objective of this study is to replicate the attenuation behavior of an excitatory postsynaptic potential (EPSP) traveling along a linear chain of compartments on the analog BrainScaleS-2 neuromorphic hardware platform.

Methods

In the present publication we use genetic algorithms to find suitable model parameters. They promise parameterization without domain knowledge of the neuromorphic substrate or underlying neuron model. To validate the results of the genetic algorithms, a comprehensive grid search was conducted. Furthermore, trial-to-trial variations in the analog system are counteracted utilizing spike-triggered averaging.

Results and conclusions

The algorithm successfully replicated the desired EPSP attenuation behavior in both single and multi-objective searches illustrating the applicability of genetic algorithms to parameterize analog neuromorphic hardware.

Corresponding author
Raphael Stock
0009-0008-5531-1072
Grant information

This project has received funding from the European Union’s Horizon 2020 research and innovation programme under grant agreement No 720270 (Human Brain Project Specific Grant Agreement 1 [HBP SGA1]), grant agreement No 785907 (Human Brain Project Specific Grant Agreement 2 [HBP SGA2]) and grant agreement number 945539 (Human Brain Project Specific Grant Agreement 3 [HBP SGA3]). As well as funding from the Deutsche Forschungsgemeinschaft (DFG, German Research Foundation) under Germany’s Excellence Strategy EXC 2181/1-390900948 (the Heidelberg STRUCTURES Excellence Cluster) as well as from the Manfred St\"ark Foundation. This work has received funding from the EU ([FP7/2007–2013], [H2020/2014–2020]) under grant agreements 604102 (HBP).

The funders had no role in study design, data collection and analysis, decision to publish, or preparation of the manuscript.

Copyright
© 2024 Raphael Stock (Corresponding Author, Co-Author); Jakob Kaiser (Co-Author); Eric Müller (Co-Author); Johannes Schemmel (Co-Author); Sebastian Schmitt (Co-Author) Creative Commons License

This work is licensed under a Creative Commons Attribution 4.0 International License.

First version published
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Amendment

This updated version incorporates references to recent literature on genetic algorithms applied to multi-compartment neurons. Additionally, we have introduced a new experiment, High-Dimensional Parameter Space, in the Results section. In this experiment, the parameters for all leak conductances and inter-compartment conductances are individually adjusted, increasing the dimensionality of the search problem compared to the previous experiment. The results are presented in two new figures, illustrating the fitness evolution and the final optimized parameters.

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Authors & roles

Raphael Stock

Kirchhoff Institute for Physics, Heidelberg University, Heidelberg, 69120, Germany

Roles
Corresponding Author, Co-Author, Conceptualization, Data Curation, Investigation, Methodology, Software, Validation, Visualization, Writing – Original Draft Preparation
0009-0008-5531-1072

Jakob Kaiser

Kirchhoff Institute for Physics, Heidelberg University, Heidelberg, 69120, Germany

Roles
Co-Author, Conceptualization, Methodology, Software, Supervision, Validation, Visualization, Writing – Review & Editing
0000-0002-3586-2634

Eric Müller

European Institute for Neuromorphic Computing, Heidelberg University, Heidelberg, 69120, Germany

Roles
Co-Author, Conceptualization, Project Administration, Resources, Software, Supervision, Validation, Writing – Original Draft Preparation, Writing – Review & Editing

Johannes Schemmel

Kirchhoff Institute for Physics, Heidelberg University, Heidelberg, 69120, Germany

Roles
Co-Author, Conceptualization, Funding Acquisition, Project Administration, Resources, Supervision, Validation, Writing – Review & Editing

Sebastian Schmitt

Department for Neuro- and Sensory Physiology, University Medical Center Göttingen, Göttingen, 37077, Germany

Roles
Co-Author, Conceptualization, Funding Acquisition, Project Administration, Resources, Software, Supervision, Validation, Writing – Review & Editing

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